chr9:97793827:A>G Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr9:100,556,109-100,556,109 View the variant detail on this assembly version. |
| hg38 | chr9:97,793,827-97,793,827 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.947 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.001 | differentiated thyroid gland carcinoma | Significant association with DTC risk was found for rs944289 near NKX2-1 (OR per... | BeFree | 25879635 | Detail |
| 0.001 | differentiated thyroid gland carcinoma | Significant association with DTC risk was found for rs944289 near NKX2-1 (OR per... | BeFree | 25879635 | Detail |
| 0.007 | Thyroid carcinoma | [the strongest association signals were observed for rs965513 on 9q22.] | GAD | 19198613 | Detail |
| 0.001 | differentiated thyroid gland carcinoma | Our results confirm that the FOXE1 rs965513 SNP confers an increased risk for DT... | BeFree | 24325646 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| Significant association with DTC risk was found for rs944289 near NKX2-1 (OR per A allele = 1.6, 95%... | DisGeNET | Detail |
| Significant association with DTC risk was found for rs944289 near NKX2-1 (OR per A allele = 1.6, 95%... | DisGeNET | Detail |
| [the strongest association signals were observed for rs965513 on 9q22.] | DisGeNET | Detail |
| Our results confirm that the FOXE1 rs965513 SNP confers an increased risk for DTC in the German popu... | DisGeNET | Detail |
Overlapped Transcript
| Gene | Transcript ID | Chromosome | Start | Stop | Links |
|---|
- Gene
- -
- dbSNP
- rs965513 dbSNP
- Genome
- hg38
- Position
- chr9:97,793,827-97,793,827
- Variant Type
- snv
- Reference Allele
- A
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs965513
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.9468
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 15869
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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